Any reports or published results obtained with MBN Explorer shall acknowledge its use and credit the developers as:
Principal citation:
Meso Bio Nano Explorer - a universal program for multiscale computer simulations of complex molecular structure and dynamics
Ilia A. Solov'yov, Alexander V. Yakubovich, Pavel V. Nikolaev, Ilya Volkovets, and Andrey V. Solov'yov Journal of Computational Chemistry 33, pp. 2412-2439 (2012). (URL)
Relativistic integrator:
Simulation of ultra-relativistic electrons and positrons channeling in crystals with MBN Explorer
Gennady B. Sushko, Victor G. Bezchastnov, Ilia A. Solov'yov, Andrei V. Korol, Walter Greiner, and Andrey V. Solov'yov Journal of Computational Physics 252, pp. 404-418 (2013). (URL)
Kinetic Monte Carlo approach:
Efficient 3D kinetic Monte Carlo method for modeling of molecular structure and dynamics
Mikhail Panshenskov, Ilia A. Solov'yov, and Andrey V. Solov'yov Journal of Computational Chemistry 35, pp. 1317-1329 (2014). (URL)
Irradiation driven molecular dynamics:
Molecular dynamics for irradiation driven chemistry: Application to the FEBID process
Gennady B. Sushko, Ilia A. Solov’yov, and Andrey V. Solov’yov, European Physical Journal D 70, 217 (2016). (URL)
Reactive molecular dynamics using reactive CHARMM force field:
Studying chemical reactions in biological systems with MBN Explorer: Implementation of molecular mechanics with dynamical topology
Gennady B. Sushko, Ilia A. Solov’yov, Alexey V. Verkhovtsev, Sergey Volkov, and Andrey V. Solov’yov, European Physical Journal D 70, 12 (2016). (URL)
Stochastic dynamics:
Multiscale modeling of stochastic dynamics processes with MBN Explorer
Ilia A. Solov'yov, Gennady Sushko, Ida Friis, and Andrey V. Solov'yov Journal of Computational Chemistry 43, pp. 1442-1458 (2022). (URL)
Electronic documents shall include a direct link to the official MBN Explorer web site: http://www.mbnexplorer.com
Proper citation is essential for further MBN Explorer development, as it is a primary way in which we demonstrate the value of our software to the scientific community. Thank you for your attention to these details.