Software-related materials

MBN Explorer flyer MBN Studio flyer MBN Explorer poster MBN Studio poster


 

  1. MBN Explorer and MBN Studio Tutorials: Version 5.0 (can be ordered here) A. Verkhovtsev, I.A. Solov'yov, A.V. Korol, G.B. Sushko, A.V. Solov'yov, MBN Explorer and MBN Studio Tutorials: Version 5.0, MesoBioNano Science Publishing, Frankfurt am Main (2024), 597 p.

    see Table of Contents

  2. MBN Explorer Users' Guide: Version 3.0 (can be ordered here) I.A. Solov'yov, G.B. Sushko, A.V. Solov'yov, MBN Explorer Users' Guide: Version 3.0, MesoBioNano Science Publishing, Frankfurt am Main (2017), 264 p.

    see Table of Contents

  3. MBN Explorer and MBN Studio Tutorials: Version 3.0 (can be ordered here) I.A. Solov'yov, G.B. Sushko, A.V. Verkhovtsev, A.V. Korol, A.V. Solov'yov, MBN Explorer and MBN Studio Tutorials: Version 3.0, MesoBioNano Science Publishing, Frankfurt am Main (2017), 288 p.

    see Table of Contents

  4. Multiscale Modeling of Complex Molecular Structure and Dynamics with MBN Explorer I.A. Solov’yov, A.V. Korol, A.V. Solov’yov, Multiscale Modeling of Complex Molecular Structure and Dynamics with MBN Explorer, Springer International Publishing (2017), 447 p., ISBN: 978-3-319-56085-4 (hardcover), ISBN: 978-3-319-56087-8 (e-book)

    see more information about this book on the dedicated webpage of Springer

  5. MBN Explorer: Simulations of Nanomaterials Structure and Dynamics I.A. Solov'yov, G.B. Sushko, A.V. Verkhovtsev, A.V. Korol, A.V. Solov'yov, MBN Explorer: Simulations of Nanomaterials Structure and Dynamics, Polytechnic University Publishing House, St. Petersburg State Polytechnic University, St. Petersburg (2015), 102 p.

    see Table of Contents

  6. MBN Explorer: Dynamics of Biomolecular Systems and Self-organization I.A. Solov'yov, G.B. Sushko, A.V. Verkhovtsev, A.V. Korol, A.V. Solov'yov, MBN Explorer: Dynamics of Biomolecular Systems and Self-organization, Polytechnic University Publishing House, St. Petersburg State Polytechnic University, St. Petersburg (2015), 112 p.

    see Table of Contents

  7. MesoBioNano Explorer - a universal program for multiscale computer simulations of complex molecular structure and dynamics the key reference publication on MBN Explorer, its main features and capabilities Reference: I.A. Solov'yov, A.V. Yakubovich, P.V. Nikolaev, I. Volkovets, and A.V. Solov'yov, MesoBioNano Explorer - a universal program for multiscale computer simulations of complex molecular structure and dynamics, J. Comput. Chem., vol. 33, pp. 2412-2439 (2012) read more...
  8. Modeling MesoBioNano systems with MBN Studio made easy the key reference publication on MBN Studio, its main features and capabilities Reference: G.B. Sushko, I.A. Solov'yov, and A.V. Solov'yov, Modeling MesoBioNano systems with MBN Studio made easy, J. Mol. Graph. Model., vol. 88, pp. 247-260 (2019) read more...
  9. Simulation of ultra-relativistic electrons and positrons channeling in crystals with MBN Explorer the key reference publication on the implementation of relativistic molecular dynamics module in MBN Explorer Reference: G.B. Sushko, V.G. Bezchastnov, I.A. Solov'yov, A.V. Korol, W. Greiner, and A.V. Solov'yov, Simulation of ultra-relativistic electrons and positrons channeling in crystals with MBN Explorer, J. Comput. Phys., vol. 252, pp. 404–418 (2013) read more...
  10. Efficient 3D kinetic Monte Carlo method for modeling of molecular structure and dynamics the key reference publication on the implementation of 3D kinetic Monte Carlo module in MBN Explorer Reference: M. Panshenskov, I.A. Solov'yov, and A.V. Solov'yov, Efficient 3D kinetic Monte Carlo method for modeling of molecular structure and dynamics, J. Comput. Chem., vol. 35, pp. 1317-1329 (2014) read more...
  11. Molecular dynamics for irradiation driven chemistry: application to the FEBID process the paper introducing the Irradiation Driven Molecular Dynamics (IDMD) methodology Reference: G.B. Sushko, I.A. Solov'yov, and A.V. Solov'yov, Molecular dynamics for irradiation driven chemistry: application to the FEBID process, Eur. Phys. J. D, vol. 70, 217 (2016) read more...
  12. Studying chemical reactions in biological systems with MBN Explorer: implementation of molecular mechanics with dynamical topology the paper introducing molecular mechanics with dynamical topology and the reactive CHARMM force field Reference: G.B. Sushko, I.A. Solov'yov, A.V. Verkhovtsev, S.N. Volkov, and A.V. Solov'yov, Studying chemical reactions in biological systems with MBN Explorer: implementation of molecular mechanics with dynamical topology, Eur. Phys. J. D, vol. 70, 12 (2016) read more...