There are various application areas of MBN Explorer. Below, highlight key case studies in various application areas are briefly overviewed.

Atomic clusters and nanoparticles
- Atomic clusters
- Molecular clusters
- Finite nanosystems: fullerenes, nanotubes, graphene, etc.
- Deposited clusters and nanoparticles
- Dynamics of cluster and nanosystems
- Multiscale modeling

Biomolecular systems
- Structure of biomolecules
- Biomolecular complexes
- Bio-nano systems
- Structural transitions, biomolecular processes
- Dynamics of DNA, RNA, and proteins
- Multiscale modeling

Nanostructured materials
- Metallic, organic, inorganic and biological nanomaterials
- Crystalline superlattices of nanoparticles
- Nanofilms
- Self-assembly and growth
- Nanoscale phase and structural transitions
- Multiscale modeling

Composite materials and material interfaces
- Nanoalloys and composites
- Material interfaces
- Functional nanoparticles and surface coatings
- Nanofractals
- Deposition, diffusion and surface pattern formation, morphological transitions
- Multiscale modeling

Crystals, liquids, gases
- Crystalline structures
- Liquids and soft matter
- Amorphous structures and glasses
- Gaseous systems
- Physical and chemical phenomena with solids, liquids and gases
- Multiscale modeling

Thermo-mechanical properties of materials
- Thermo-mechanical properties
- Tribological properties
- Elastic and plastic deformations
- Nanoindentation
- Dislocations
- Nanoscale phase and structural transitions
- Multiscale modeling

Collisional processes
- Collisional processes involving clusters, nanoparticles and biomolecules
- Molecular association and dissociation
- Collision induced fragmentation
- Laser, thermal, collision induced desorption
- Particles propagation through a medium
- Collision induced thermo-mechanical medium effects

Emerging technologies
- Biomedical applications driven by nanoprocesses and technologies, e.g. advanced radiotherapies
- Deposition technologies: spattering, CVD, PVD, FEBID, etc.
- Crystalline undulator-based novel light sources
- Virtual design of materials
- Computational nano- and microscope